seurat_preprocess: Preprocess Seurat Object
In whtns/seuratTools: Tools for Managing Seurat Objects
View source: R/seurat_cluster.R
seurat_preprocess R Documentation
Preprocess Seurat Object
Description
Performs standard pre-processing workflow for scRNA-seq data
Usage
seurat_preprocess(
assay,
scale = TRUE,
normalize = TRUE,
features = NULL,
legacy_settings = FALSE,
...
)
Arguments
assay
Assay to use
scale
Perform linear transformation 'Scaling'
normalize
Perform normalization
features
Identify highly variable features
legacy_settings
Use legacy settings
...
Examples
panc8[["gene"]] <- seurat_preprocess(panc8[["gene"]])
whtns/seuratTools documentation built on April 9, 2024, midnight
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View source: R/seurat_cluster.R
| seurat_preprocess | R Documentation |
Preprocess Seurat Object
Description
Performs standard pre-processing workflow for scRNA-seq data
Usage
seurat_preprocess(
assay,
scale = TRUE,
normalize = TRUE,
features = NULL,
legacy_settings = FALSE,
...
)
Arguments
assay |
Assay to use |
scale |
Perform linear transformation 'Scaling' |
normalize |
Perform normalization |
features |
Identify highly variable features |
legacy_settings |
Use legacy settings |
... |
Examples
panc8[["gene"]] <- seurat_preprocess(panc8[["gene"]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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