stash_marker_features: Stash Marker Genes in a Seurat Object
In whtns/seuratTools: Tools for Managing Seurat Objects
stash_marker_features R Documentation
Stash Marker Genes in a Seurat Object
Description
Marker Genes will be stored in slot @misc$markers
Usage
stash_marker_features(
metavar,
seu,
seurat_assay,
top_n = 200,
p_val_cutoff = 0.5
)
Arguments
metavar
A metadata variable to group by
seu
A seurat object
seurat_assay
An assay to use
top_n
Use top n genes, Default "200"
p_val_cutoff
p value cut-off, Default value is "0.5"
Examples
seu <- stash_marker_features(metavar = "batch", seu, seurat_assay = "gene")
whtns/seuratTools documentation built on Oct. 28, 2024, 7:18 a.m.
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| stash_marker_features | R Documentation |
Stash Marker Genes in a Seurat Object
Description
Marker Genes will be stored in slot @misc$markers
Usage
stash_marker_features(
metavar,
seu,
seurat_assay,
top_n = 200,
p_val_cutoff = 0.5
)
Arguments
metavar |
A metadata variable to group by |
seu |
A seurat object |
seurat_assay |
An assay to use |
top_n |
Use top n genes, Default "200" |
p_val_cutoff |
p value cut-off, Default value is "0.5" |
Examples
seu <- stash_marker_features(metavar = "batch", seu, seurat_assay = "gene")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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