ref.phylosor: 'ref.phylosor' Calculate phylosor using a single assembalge...
In willpearse/willeerd: Will's Eco-Evo R coDe

Description Usage Arguments Details Value Author(s) Examples

ref.phylosor Calculate phylosor using a single assembalge as a reference

1	ref.phylosor(samp, reference, tree)

`samp`	community matrix
`reference`	community/assemblage to be used as a reference
`tree`	ape::phylo phylogeny

Exactly as phylosor, except calculates the distance of everything in samp from the reference. A "good" way of dealing with large datasets, if you can't fit everything in memory at the same time.

A vector of the distances of the communities from the reference

Will Pearse, based on picante::phylosor

## Not run: 
require(picante)
data(phylocom)
phylosor(phylocom$sample, phylocom$phylo)
ref.phylosor(phylocom$sample, phylocom$sample[6,], phylocom$phylo)

## End(Not run)