transition.calc: 'transition.calc' regression of aged transitions among...

In willpearse/willeerd: Will's Eco-Evo R coDe

Description

transition.calc regression of aged transitions among character states

Usage

transition.calc(tree, continuous, discrete, simmap.model = "ER",
  simmap.nsim = 1000, simmap.pi = "estimated")

Arguments

tree	a phylogeny (of class phylo)
continuous	continuous trait (named) to be regressed
discrete	discrete category (named) species are evolving between whose transitions you wish to model
simmap.model	parameter for make.simmap
simmap.nsim	parameter for make.simmap
simmap.pi	parameter for make.simmap

Author(s)

Will Pearse

Examples

## Not run: 
tree <- rtree(50)
continuous <- rnorm(50); names(continuous) <- tree$tip.label
discrete <- factor(sample(letters[1:6], 50, replace=TRUE)); names(discrete) <- tree$tip.label
silly <- transition.calc(tree, continuous, discrete, simmap.nsim=10)
plot(silly)

## End(Not run)

willpearse/willeerd documentation built on May 4, 2019, 6:27 a.m.