willeerd.plot.phylo: 'willeerd.plot.phylo' Plot a rooted phylogeny (with more...

Description Usage Arguments Details Value Author(s) Examples

Description

willeerd.plot.phylo Plot a rooted phylogeny (with more control over the root)

Usage

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willeerd.plot.phylo(x, type = "phylogram", use.edge.length = TRUE,
  node.pos = NULL, show.tip.label = TRUE, show.node.label = FALSE,
  edge.color = "black", edge.width = 1, edge.lty = 1, font = 3,
  cex = par("cex"), adj = NULL, srt = 0, no.margin = FALSE,
  root.edge = FALSE, label.offset = 0, underscore = FALSE, x.lim = NULL,
  y.lim = NULL, direction = "rightwards", lab4ut = "horizontal",
  tip.color = "black", plot = TRUE, rotate.tree = 0, open.angle = 0,
  ...)

Arguments

x

phylogeny to plot

type

see plot.phylo

use.edge.length

see plot.phylo

node.pos

see plot.phylo

show.tip.label

see plot.phylo

show.node.label

see plot.phylo

edge.color

see plot.phylo

edge.width

see plot.phylo

edge.lty

see plot.phylo

font

see plot.phylo

cex

see plot.phylo

adj

see plot.phylo

srt

see plot.phylo

no.margin

see plot.phylo

root.edge

see plot.phylo

label.offset

see plot.phylo

underscore

see plot.phylo

x.lim

see plot.phylo

y.lim

see plot.phylo

direction

see plot.phylo

lab4ut

see plot.phylo

tip.color

see plot.phylo

plot

see plot.phylo

rotate.tree

see plot.phylo

open.angle

see plot.phylo

...

see plot.phylo

Details

Almost *identical* to plot.phylo, but with root edge width control. Just try the example. Don't cite this, cite ape!

Value

...exactly as plot.phylo

Author(s)

Will Pearse

Examples

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## Not run: 
tree <- rtree(20)
par(mfrow=c(1,2))
plot(tree, edge.width=6, root.edge=TRUE)
willeerd.plot.phylo(tree, edge.width=6, root.edge=TRUE)

## End(Not run)

willpearse/willeerd documentation built on May 4, 2019, 6:27 a.m.