KEGGplot: plot KEGG plot with your interisting genelist

In windforclouds/PSV2N: This is a shortest path-based algorithm named PS-V2N.

Description

plot KEGG plot with your interisting genelist

Usage

KEGGplot(
  genelist,
  enrich.pvalue = 0.05,
  low.color = "green",
  high.color = "red",
  labs.x = "Pvalue",
  labs.y = "Pathway Name",
  titlesize.y = 8,
  labs.title = "Pathway Enrichment"
)

Arguments

genelist	a vector of gene SYMBOL
enrich.pvalue	default value 0.05
low.color	default parameter "green".must be one of colors: "black","red","green","blue","cyan","magenta","yellow","gray"
high.color	default parameter "red".must be one of colors: "black","red","green","blue","cyan","magenta","yellow","gray"
labs.x	default "Pvalue"
labs.y	default "Pathway Name"
titlesize.y	default 8
labs.title	default "Pathway Enrichment"

Examples

KEGGplot(vertex_sample[,1])

windforclouds/PSV2N documentation built on Dec. 23, 2021, 5:15 p.m.