Man pages for wjawaid/roots
Reconstructing Ordered Ontogenic Trajectories

animPlotAnimation plot
animPlotGifGenerates a GIF animating
applyGaussianKernelwithVariableSigmaApply Gaussian Kernel using Laleh Haghverdi's variable sigma
bgGeneNormNormalise by background gene set
calculateVariableSigmasCalculates sigmas for a distance matrix
colGradGenerates a smooth colour gradient
diffuseMatGeneric diffusion function
diffuseProjPredicts diffusion map projection from new data points
fastDistFast vectorised Euclidean distance calculator
filterGenesFilter genes
findLouvainLouvain clustering on transition matrix
fncFind next cell function
getTrajFind a plausible developmental journey
gogglesView single cell dataset
sparseMarkovMake markov matrix sparse
wjawaid/roots documentation built on Sept. 12, 2017, 9:51 a.m.