Description Usage Arguments Details Value Author(s) Examples
Normalise by background gene set
1 | bgGeneNorm(x, threshold = 0.05)
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x |
Matrix to be normalised with cells in rows and genes in columns |
threshold |
Default 0.05. The threshold below which a gene is deemed background |
Normalise by background gene set. Find background genes that are expressed at a lower percentage of the total library size per cell than 'threshold' parameter. These genes are used to calculate a normalisation factor.
Returns a normalised matrix of same dimenions as 'x'
Wajid Jawaid
1 2 3 4 | ## Not run:
normGenes <- bgGeneNorm(x)
## End(Not run)
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