filterGenes: Filter genes

In wjawaid/roots: Reconstructing Ordered Ontogenic Trajectories

Description

Filter genes

Usage

filterGenes(x, mu = 0.01, cv = 2, fano = FALSE, verbose = FALSE)

Arguments

x	Matrix to be normalised with cells in rows and genes in columns
mu	Meam threshold
cv	Coefficient of variation or Fano factor threshold.
fano	Default TRUE. Predicate treat CV as Fano factor or CV
verbose	Default FALSE. Return plot.

Details

Filter genes Filter genes by mean and either coefficient of variation, cv or Fano factor.

Value

Returns a filtered matrix with same number of cells but fewer genes than 'x'

Author(s)

Wajid Jawaid

Examples

## Not run: 
expressionGenesFiltered <- filterGenes(x)

## End(Not run)

wjawaid/roots documentation built on May 20, 2019, 11:37 a.m.