fit: Function 'fit'

Description Usage Arguments Value

Description

run benchmark methods on simulation objects

Usage

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fit(path, benchmarks = "edgeR", fbseq_methods = c("fullybayes", "ibayes",
  "ebayesFromFullybayes", "ebayesFromStarts", "ebayesFromTruth"),
  priors = c("normal", special_beta_priors()), ncores = detectCores(),
  configs = Configs(), zeronormfactors = F)

Arguments

path

to directory to save simulations and results

benchmarks

benchmark methods to run

fbseq_methods

"ebayesFromFullybayes", "ebayesFromStarts", "ebayesFromTruth", "fullybayes", or a combination/vector of these. "fullybayes" must come before "ebayesFromFullybayes".

priors

hierarchical distributions on the betas. Either a vector, each of whose elements is in the slot Configs()@priors, or a list of vectors, where each vector is in the slot Configs@priors.

ncores

number of cores for CPU-parallel methods

configs

Configs object for fbseq

zeronormfactors

TRUE/FALSE. If TRUE, starts@h is set to 0.

Value

path to simulated objects


wlandau/fbseqStudies documentation built on May 4, 2019, 8:44 a.m.