Description Usage Arguments Value
run benchmark methods on simulation objects
1 2 3 4 | fit(path, benchmarks = "edgeR", fbseq_methods = c("fullybayes", "ibayes",
"ebayesFromFullybayes", "ebayesFromStarts", "ebayesFromTruth"),
priors = c("normal", special_beta_priors()), ncores = detectCores(),
configs = Configs(), zeronormfactors = F)
|
path |
to directory to save simulations and results |
benchmarks |
benchmark methods to run |
fbseq_methods |
"ebayesFromFullybayes", "ebayesFromStarts", "ebayesFromTruth", "fullybayes", or a combination/vector of these. "fullybayes" must come before "ebayesFromFullybayes". |
priors |
hierarchical distributions on the betas. Either a vector, each of whose elements is in the slot Configs()@priors, or a list of vectors, where each vector is in the slot Configs@priors. |
ncores |
number of cores for CPU-parallel methods |
configs |
|
zeronormfactors |
TRUE/FALSE. If TRUE, starts@h is set to 0. |
path to simulated objects
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