API for wmacnair/SampleQC
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
| Global functions | |
|---|---|
| .add_annot_vars | Man page Source code |
| .add_log_counts | Man page Source code |
| .add_log_feats | Man page Source code |
| .add_logit_mito | Man page Source code |
| .add_qc_annots | Man page Source code |
| .add_splice_ratio | Man page Source code |
| .add_unknown_metrics | Man page Source code |
| .assemble_fit_results | Man page Source code |
| .calc_ellipses_dt | Man page Source code |
| .calc_mat_list | Man page Source code |
| .calc_mmd_mat | Man page Source code |
| .calc_one_ellipse | Man page Source code |
| .calc_outliers_dt | Man page Source code |
| .calc_p_jk_proportions | Man page Source code |
| .check_fit_params | Man page Source code |
| .check_is_qc_obj | Man page Source code |
| .check_qc_dt | Man page Source code |
| .cluster_mmd_graph | Man page |
| .dist_fn | Man page |
| .draw_Sigma_k | Man page |
| .draw_alpha_j | Man page |
| .draw_beta_k | Man page Source code |
| .draw_delta_jk | Man page |
| .draw_dir_0 | Man page |
| .draw_expt_params | Man page Source code |
| .draw_mu_0s | Man page Source code |
| .draw_out_j | Man page |
| .draw_outliers | Man page |
| .draw_p_jk | Man page |
| .draw_p_loss_0s | Man page |
| .draw_p_out_0s | Man page |
| .draw_samples | Man page |
| .draw_sel_ks | Man page |
| .draw_theta_0s | Man page |
| .draw_z | Man page |
| .embed_mds | Man page |
| .embed_umap | Man page |
| .fit_one_sampleqc | Man page Source code |
| .init_clusts | Man page Source code |
| .init_qc_dt | Man page Source code |
| .make_mmd_graph | Man page |
| .make_toy_qc_df | Man page Source code |
| .make_toy_sce | Man page Source code |
| .plot_one_embedding | Man page Source code |
| .process_annot_vars | Man page |
| .process_outputs | Man page |
| .sim_ok_cells | Man page |
| .sim_outliers | Man page |
| .sim_sample_group | Man page |
| SampleQC | Man page |
| calc_pairwise_mmds | Man page Source code |
| centre_x | Source code |
| fit_sampleqc | Man page Source code |
| fit_sampleqc_mle_cpp | Man page Source code |
| fit_sampleqc_robust_cpp | Man page Source code |
| get_n_groups | Man page Source code |
| get_outliers | Man page Source code |
| init_alpha_j | Source code |
| list_known_metrics | Man page Source code |
| make_qc_dt | Man page Source code |
| make_sampleqc_report | Man page Source code |
| mmd_fn | Man page Source code |
| plot_alpha_js | Man page Source code |
| plot_alpha_js_likelihoods | Man page Source code |
| plot_beta_ks | Man page Source code |
| plot_embeddings | Man page Source code |
| plot_fit_over_biaxials | Man page Source code |
| plot_mmd_heatmap | Man page Source code |
| plot_outliers | Man page Source code |
| print_ivector | Source code |
| print_matrix | Source code |
| print_vector | Source code |
| reorder_cube_cols | Source code |
| reorder_cube_rows | Source code |
| reorder_cube_slices | Source code |
| reorder_matrix_cols | Source code |
| reorder_matrix_rows | Source code |
| reorder_vector | Source code |
| set_seed_cpp | Source code |
| simulate_qcs | Man page Source code |
| subsample_mmd_fn | Man page Source code |
