findOut: Remove outlying samples

In wmoldham/seahorse: Analyze Seahorse Bioenergetic Data

Remove outlying samples

Description

Generic function for removing outliers.

Usage

findOut(x, ...)

## S4 method for signature 'Seahorse'
findOut(x, blanks = TRUE, outliers = FALSE, ...)

Arguments

x	An R object. Currently there are methods for Seahorse and Herd objects.
...	Reserved for future development
blanks	Should findOut look for outliers in blank samples?
outliers	Should findOut include current outliers when looking for new outliers?

Value

Returns a data frame of outlying samples.

Methods (by class)

• findOut(Seahorse): This method compares OCR and ECAR rates within experimental groups to identify outlying wells. The function returns a data frame identifying outlying wells. These wells can then be excluded from downstream analyses by assigning to the Seahorse object using ⁠outliers<-⁠.

Examples

outliers(sheldon, "replace") <- findOut(sheldon)

wmoldham/seahorse documentation built on June 9, 2025, 11:36 a.m.