format_cells: Import table of normalization values

In wmoldham/seahorse: Analyze Seahorse Bioenergetic Data

Import table of normalization values

Description

This function will read in a .csv file of normalization data.

Usage

format_cells(path, blanks = c("A01", "B04", "C03", "D06"))

Arguments

path	Path to the data file
blanks	A character vector of blank well IDs. If no blanks were included in the experiment, set to NA.

Details

The file should be organized the same as the Seahorse microplate. The header row must be row followed by the column number formatted as x01. The row column should be the letter identification for each row:

row	x01	x02	x03	x04	x05	x06
A	...	...	...	...	...	...
B	...	...	...	...	...	...
C	...	...	...	...	...	...
D	...	...	...	...	...	...

Example data may also be found in the extdata folder of the package source. The average blank value will be subtracted from the sample values.

Value

A tbl_df of normalization data

Examples

path <- system.file("extdata/counts_1.csv", package = "seahorse", mustWork = TRUE)
format_cells(path, blanks = c("A01", "B04", "C03", "D06"))

wmoldham/seahorse documentation built on June 9, 2025, 11:36 a.m.