Files in wokai/seqTools
Analysis of nucleotide, sequence and quality content on fastq files.
DESCRIPTION
NAMESPACE
NEWS
R/allClasses.r
R/allGenerics.r
R/allStatics.r
R/fastaFunctions.r
R/kMer.r
R/seqTools.r
R/simFunctions.r
R/trimFastq.r
inst/extdata/g4_l101_n100.fq.gz
inst/extdata/g5_l101_n100.fq.gz
inst/extdata/sfq1_cont.fq.gz
inst/extdata/sfq1_ctrl.fq.gz
inst/extdata/sfq2_cont.fq.gz
inst/extdata/sfq2_ctrl.fq.gz
inst/extdata/sim.fq.gz
inst/extdata/small.fa
inst/extdata/small.fa.gz
inst/extdata/test_buftest.fq
inst/extdata/test_l10_20_40.fq
inst/extdata/test_l10_ATCGN.fq
inst/extdata/test_l10_atcg.fq
inst/extdata/test_l4.fq
inst/extdata/test_l5_N.fq
inst/extdata/test_l6.fq
inst/extdata/test_l6_LF_end.fq
inst/extdata/test_l6_corrupt.fq
inst/extdata/test_l6_multi_line.fq
inst/extdata/test_res.RData
man/Fastqq-class.Rd
man/ascii2char.Rd
man/cbDistMatrix.Rd
man/collectDur.Rd
man/countDnaKmers.Rd
man/countFastaKmers.Rd
man/countGenomeKmers.Rd
man/countSpliceKmers.Rd
man/fastqKmerLocs.Rd
man/fastqKmerSubsetLocs.Rd
man/fastqq.Rd
man/gcContentMatrix.Rd
man/kMerIndex.Rd
man/meltDownK.Rd
man/mergeFastqq.Rd
man/mergedPhred.Rd
man/phredDist.Rd
man/phredTable.Rd
man/plotGCcontent.Rd
man/plotKmerCount.Rd
man/plotNucCount.Rd
man/plotNucFreq.Rd
man/plotPhredQuant.Rd
man/propPhred.Rd
man/revCountDnaKmers.Rd
man/seqTools-package.Rd
man/simFastqqRunTimes.Rd
man/sim_fq.Rd
man/trimFastq.Rd
man/writeFai.Rd
man/writeSimContFastq.Rd
man/writeSimFastq.Rd
src/Makevars
src/Makevars.win
src/dna_astream.h
src/dna_fasta_stream.h
src/dna_fstream.h
src/fa_traverse.h
src/fastq_parser.h
src/fq_traverse.h
src/resize_matrix.h
src/seqTools.c
src/seqTools.h
src/seq_art.h
src/stat_defs.h
tests/test-all.R
tests/test_seqTools.r
vignettes/seqTools.Rnw
vignettes/seqTools.bib
vignettes/seqTools_qual_report.Rnw
