Files in wokai/seqTools
Analysis of nucleotide, sequence and quality content on fastq files.

DESCRIPTION
NAMESPACE
NEWS
R/allClasses.r R/allGenerics.r R/allStatics.r R/fastaFunctions.r R/kMer.r R/seqTools.r R/simFunctions.r R/trimFastq.r
inst/extdata/g4_l101_n100.fq.gz
inst/extdata/g5_l101_n100.fq.gz
inst/extdata/sfq1_cont.fq.gz
inst/extdata/sfq1_ctrl.fq.gz
inst/extdata/sfq2_cont.fq.gz
inst/extdata/sfq2_ctrl.fq.gz
inst/extdata/sim.fq.gz
inst/extdata/small.fa
inst/extdata/small.fa.gz
inst/extdata/test_buftest.fq
inst/extdata/test_l10_20_40.fq
inst/extdata/test_l10_ATCGN.fq
inst/extdata/test_l10_atcg.fq
inst/extdata/test_l4.fq
inst/extdata/test_l5_N.fq
inst/extdata/test_l6.fq
inst/extdata/test_l6_LF_end.fq
inst/extdata/test_l6_corrupt.fq
inst/extdata/test_l6_multi_line.fq
inst/extdata/test_res.RData
man/Fastqq-class.Rd man/ascii2char.Rd man/cbDistMatrix.Rd man/collectDur.Rd man/countDnaKmers.Rd man/countFastaKmers.Rd man/countGenomeKmers.Rd man/countSpliceKmers.Rd man/fastqKmerLocs.Rd man/fastqKmerSubsetLocs.Rd man/fastqq.Rd man/gcContentMatrix.Rd man/kMerIndex.Rd man/meltDownK.Rd man/mergeFastqq.Rd man/mergedPhred.Rd man/phredDist.Rd man/phredTable.Rd man/plotGCcontent.Rd man/plotKmerCount.Rd man/plotNucCount.Rd man/plotNucFreq.Rd man/plotPhredQuant.Rd man/propPhred.Rd man/revCountDnaKmers.Rd man/seqTools-package.Rd man/simFastqqRunTimes.Rd man/sim_fq.Rd man/trimFastq.Rd man/writeFai.Rd man/writeSimContFastq.Rd man/writeSimFastq.Rd
src/Makevars
src/Makevars.win
src/dna_astream.h
src/dna_fasta_stream.h
src/dna_fstream.h
src/fa_traverse.h
src/fastq_parser.h
src/fq_traverse.h
src/resize_matrix.h
src/seqTools.c
src/seqTools.h
src/seq_art.h
src/stat_defs.h
tests/test-all.R tests/test_seqTools.r
vignettes/seqTools.Rnw
vignettes/seqTools.bib
vignettes/seqTools_qual_report.Rnw
wokai/seqTools documentation built on May 28, 2017, 5:13 a.m.