writeFai: writeFai: Create FASTA index file.
In wokai/seqTools: Analysis of nucleotide, sequence and quality content on fastq files.
Description
Usage
Arguments
Value
Author(s)
References
Examples
View source: R/fastaFunctions.r
Description
The function reads a FASTA file and produces a FASTA index file
as output.
Usage
1
writeFai(infiles, outfiles)
Arguments
infiles
character. Vector of FASTA file names for which
FASTA index is to be written.
outfiles
character. Vector file names for writing FASTA
index to.
Value
None.
Author(s)
Wolfgang Kaisers
References
Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM
The sanger FASTQ file format for sequences with quality scores and
the Solexa/Illumina FASTQ variants.
Nucleic Acids Research 2010 Vol.38 No.6 1767-1771
Examples
1
2
3
4
5
## Not run:
infile <- system.file("extdata", "small.fa", package="seqTools")
writeFai(infile, "small.fa.fai")
## End(Not run)
wokai/seqTools documentation built on May 4, 2019, 9:46 a.m.
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Description Usage Arguments Value Author(s) References Examples
View source: R/fastaFunctions.r
Description
The function reads a FASTA file and produces a FASTA index file as output.
Usage
1 | writeFai(infiles, outfiles)
|
Arguments
infiles |
|
outfiles |
|
Value
None.
Author(s)
Wolfgang Kaisers
References
Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM The sanger FASTQ file format for sequences with quality scores and the Solexa/Illumina FASTQ variants. Nucleic Acids Research 2010 Vol.38 No.6 1767-1771
Examples
1 2 3 4 5 | ## Not run:
infile <- system.file("extdata", "small.fa", package="seqTools")
writeFai(infile, "small.fa.fai")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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