phredTable: phredTable: Returns a data.frame with phred encodings.
In wokai/seqTools: Analysis of nucleotide, sequence and quality content on fastq files.
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
The function calculates characters and corresponding ascii values for a given
range of phred values. As default, a data.frame with all valid phred values
{0,...,93} is returned.
Usage
1
Arguments
phred
numeric. Vector with phred values. All values must be
in 0:93
Value
data.frame. The data.frame has three columns: "ascii","phred"
and "char"
Author(s)
Wolfgang Kaisers
References
Ewing B, Green P
Base-calling of automated sequencer traces using phred. II. Error probabilities.
Genome Research 1998 Vol. 8 No. 3 186-194
See Also
char2ascii
Examples
1
wokai/seqTools documentation built on May 4, 2019, 9:46 a.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
The function calculates characters and corresponding ascii values for a given range of phred values. As default, a data.frame with all valid phred values {0,...,93} is returned.
Usage
1 |
Arguments
phred |
|
Value
data.frame. The data.frame has three columns: "ascii","phred"
and "char"
Author(s)
Wolfgang Kaisers
References
Ewing B, Green P Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Research 1998 Vol. 8 No. 3 186-194
See Also
char2ascii
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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