Man pages for wrightaprilm/treeStartR
Generate Starting Trees For Combined Molecular, Morphological and Stratigraphic Data
| absent_tippR | Add tips to tree via user input |
| bears | bears |
| dataf_parsR | Detect file format of taxon file |
| echo_rb | Print RevBayes-formatted clade constriants. |
| echo_subtree | Print subtrees with tips added. |
| fileFormat | Utility function to check if file is a csv or tsv. |
| genera_strippR | Check if tip is on tree |
| get_found | Get dataframe of tips that do not have congeners on tree. |
| get_lost | Determine if a tip is present on a tree |
| make_absentdf | Determine which tips are not on the tree, and get their... |
| make_treedf | Determine which tips are on the tree, and get their genera. |
| present_tippR | Add tips to the tree based on taxonomy. |
| rand_absent_tippR | Random addition of taxa |
| taxon_testr | Utility function to check taxon_names in parsed data file |
| text_placR | Add tips to tree via taxon list |
| treestartr | treestartr: A package for generating reasonable starting... |
