echo_subtree: Print subtrees with tips added.

In wrightaprilm/treeStartR: Generate Starting Trees For Combined Molecular, Morphological and Stratigraphic Data

Description

Once a tip has been added to the tree, print the newick-formatted subtree to which the tip was added.

Usage

echo_subtree(tree, mrca_list, tip)

Arguments

tree	Tree to which the tip will be added; object of type phylo
mrca_list	Vector of taxa. The added tip will subtend the MRCA of these taxa
tip	Taxon which will be added to the tree.

Value

tree subtree to which tip was added

Examples

mrca_list <- c("Ursus_arctos", "Ursus_spelaeus", "Ursus_americanus")
tree <- text_placr(tree, mrca_df)
echo_sub <- echo_subtree(tree, mrca_list, "Ursus_abstrusus")

wrightaprilm/treeStartR documentation built on Dec. 9, 2019, 4:21 p.m.