excounts: Accessors for the 'excounts' slot of a ABSDataSet object.
In wtaoyang/ABSSeq: ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Description
Usage
Arguments
Details
See Also
Examples
Description
Accessors for the 'excounts' slot of a ABSDataSet object, return a matrix
Usage
1
2
## S4 replacement method for signature 'ABSDataSet,matrix'
excounts(object)<-value
Arguments
object
a ABSDataSet object.
value
an numeric matrix
Details
The excounts slot holds the nomarlized (trimmed or not) count data as a matrix of non-negative integer
count values, rows and columns for genes and samples, respectively.
See Also
ABSDataSet, ReplaceOutliersByMAD
Examples
1
2
3
4
5
data(simuN5)
obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
obj <- normalFactors(obj)
obj <- ReplaceOutliersByMAD(obj)
head(excounts(obj))
wtaoyang/ABSSeq documentation built on May 27, 2019, 8:46 a.m.
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Description Usage Arguments Details See Also Examples
Description
Accessors for the 'excounts' slot of a ABSDataSet object, return a matrix
Usage
1 2 | ## S4 replacement method for signature 'ABSDataSet,matrix'
excounts(object)<-value
|
Arguments
object |
a |
value |
an numeric matrix |
Details
The excounts slot holds the nomarlized (trimmed or not) count data as a matrix of non-negative integer count values, rows and columns for genes and samples, respectively.
See Also
ABSDataSet, ReplaceOutliersByMAD
Examples
1 2 3 4 5 | data(simuN5)
obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
obj <- normalFactors(obj)
obj <- ReplaceOutliersByMAD(obj)
head(excounts(obj))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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