normMethod: Accessors for the 'normMethod' slot of a ABSDataSet object.
In wtaoyang/ABSSeq: ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Description
Usage
Arguments
Details
Examples
Description
Accessor functions for the 'normMethod' information in a ABSDataSet
object.
Usage
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## S4 method for signature 'ABSDataSet'
normMethod(object)
## S4 replacement method for signature 'ABSDataSet,character'
normMethod(object)<-value
Arguments
object
an ABSDataSet object.
value
a character object, should be one of 'user', 'qtoatl', 'total', 'quartile' and 'geometric'.
See normalFactors
Details
The 'normMethod' is the method for calculating the size factors.
Currently, Four methods: 'user', 'qtoatl', 'total', 'quartile' and 'DESeq' are
available.
Examples
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data(simuN5)
obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
normMethod(obj)
normMethod(obj) <- "geometric"
normMethod(obj)
wtaoyang/ABSSeq documentation built on May 27, 2019, 8:46 a.m.
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Description Usage Arguments Details Examples
Description
Accessor functions for the 'normMethod' information in a ABSDataSet object.
Usage
1 2 3 4 5 | ## S4 method for signature 'ABSDataSet'
normMethod(object)
## S4 replacement method for signature 'ABSDataSet,character'
normMethod(object)<-value
|
Arguments
object |
an |
value |
a character object, should be one of 'user', 'qtoatl', 'total', 'quartile' and 'geometric'.
See |
Details
The 'normMethod' is the method for calculating the size factors. Currently, Four methods: 'user', 'qtoatl', 'total', 'quartile' and 'DESeq' are available.
Examples
1 2 3 4 5 | data(simuN5)
obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
normMethod(obj)
normMethod(obj) <- "geometric"
normMethod(obj)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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