API for wu-lab-uva/RasperGade
Reconstructing Ancestral State under Pulsed Evolution in R by Gaussian Decomposition
| Global functions | |
|---|---|
| F_beta_score | Man page Source code |
| LOO_CV_with_BM | Man page Source code |
| LOO_CV_with_PE | Man page Source code |
| analyzeResidualErrorByCI | Man page Source code |
| analyzeResidualErrorByHeteroscedasticity | Man page Source code |
| analyzeResidualErrorByPPplot | Man page Source code |
| calculateBinomRSS | Man page Source code |
| calculateHeteroscedasticity | Man page Source code |
| calculate_CI_from_error_distribution | Man page Source code |
| calculate_R2cv | Man page Source code |
| calculate_error_mean_and_var | Man page Source code |
| compoundNormalMoments | Man page Source code |
| continuousAceByPIC | Man page Source code |
| crossValidationWithPE | Man page Source code |
| dMixNormal | Man page Source code |
| dPEpoisnorm | Man page Source code |
| discretizeResult | Man page Source code |
| findBestNormalApproximation1 | Man page Source code |
| findBestNormalApproximation2 | Man page Source code |
| findEdges | Man page Source code |
| findSisters | Man page Source code |
| findTerminalPIC | Man page |
| fit.model.byNM | Man page Source code |
| fit.model.byNM.2step | Man page Source code |
| fitPE | Man page Source code |
| fitPE.phy | Man page Source code |
| fullMarginalReconstructionWithPE | Man page Source code |
| get.AIC | Man page Source code |
| get.params | Man page Source code |
| getAncestor | Man page |
| getConnected | Man page Source code |
| getLatestAncestor | Man page |
| getNextDescendants | Man page |
| getRoot | Man page Source code |
| get_descendant_nodes_for_each_node | Man page Source code |
| get_descendant_tips_for_each_node | Man page Source code |
| globalReconstructionWithPE | Man page Source code |
| initialize.parameters.SP | Man page Source code |
| locate_query_sequences | Man page Source code |
| logitSigmoid | Man page Source code |
| make_traceable_edge_label | Man page Source code |
| marginalReconstruction | Man page Source code |
| marginalReconstructionWithPE | Man page Source code |
| mix_errors_by_weight | Man page Source code |
| normalize.AIC | Man page Source code |
| pMixNormal | Man page Source code |
| pPEpoisnorm | Man page Source code |
| partition_test_set_with_minimum_distance | Man page Source code |
| precision_recall | Man page Source code |
| predTraitByPIC | Man page Source code |
| predictHiddenStateWithPE | Man page Source code |
| predict_hidden_state_by_pic | Man page Source code |
| productNormalDensity | Man page Source code |
| pseudo.Z.score | Man page Source code |
| pseudo.pic | Man page Source code |
| rMixNormal | Man page Source code |
| rPEpoisnorm | Man page Source code |
| reconstructAncestralStates | Man page Source code |
| reroot_tree_at_tip | Man page Source code |
| reverse.logitSigmoid | Man page Source code |
| simulatePET | Man page Source code |
| simulatePET.phy | Man page Source code |
| sort_and_digest | Man page Source code |
| summarize.model.parameter | Man page Source code |
| total.process.variance | Man page Source code |
