simulatePET: Simulate trait under pulsed evolution
In wu-lab-uva/RasperGade: Reconstructing Ancestral State under Pulsed Evolution in R by Gaussian Decomposition
View source: R/RasperGade_simulation.R
simulatePET R Documentation
Simulate trait under pulsed evolution
Description
Simulate trait under pulsed evolution
Usage
simulatePET(l, align.length = NA, lambda, size, sigma, epsilon, nj = NULL)
simulatePET.phy(phy, lambda, size, sigma, epsilon, start = 0)
Arguments
l
branch length of time/divergence
lambda
jump frequency
size
variance of trait change per jump
sigma
rate of BM
epsilon
variance of time-independent variation
phy
a phylo-class object from the ape package
wu-lab-uva/RasperGade documentation built on June 24, 2022, 2:47 p.m.
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View source: R/RasperGade_simulation.R
| simulatePET | R Documentation |
Simulate trait under pulsed evolution
Description
Simulate trait under pulsed evolution
Usage
simulatePET(l, align.length = NA, lambda, size, sigma, epsilon, nj = NULL) simulatePET.phy(phy, lambda, size, sigma, epsilon, start = 0)
Arguments
l |
branch length of time/divergence |
lambda |
jump frequency |
size |
variance of trait change per jump |
sigma |
rate of BM |
epsilon |
variance of time-independent variation |
phy |
a phylo-class object from the |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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