fitModel2Step: Wrapper function for optimization

In wu-lab-uva/RasperGade: Reconstructing Ancestral State under Pulsed Evolution in R by Gaussian Decomposition

Wrapper function for optimization

Description

Fit pulsed evolution with reliable results

Usage

fit.model.byNM.2step(
  fit.func = "mle2",
  start.params,
  params1,
  params2,
  AIC.func = "AIC",
  params.func = function(x) {     x@coef },
  ini.func = "as.list",
  AIC.cutoff = 2,
  ...
)

fit.model.byNM(
  fit.func = "mle2",
  start.params,
  params,
  AIC.func = "AIC",
  params.func = function(x) {     x@coef },
  ini.func = "as.list",
  AIC.cutoff = 2,
  ...
)

wu-lab-uva/RasperGade documentation built on June 24, 2022, 2:47 p.m.