Files in wuxi-nextcode/topR
Create custom plots for viewing genetic association results using ggplot
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
Makefile
NAMESPACE
NEWS.md
R/dat_checks.R
R/data.R
R/effectplot.R
R/exonplot.R
R/geneplot.R
R/get_genes_and_annotation.R
R/get_plots.R
R/globals.R
R/locuszoomplot.R
R/manhattan.R
R/miscellaneous.R
R/plot_functions.R
R/qqtopr.R
R/regionplot.R
R/setters_and_getters.R
R/sysdata.rda
R/utils-pipe.R
README.Rmd
README.html
README.md
data/CD_FINNGEN.rda
data/CD_UKBB.rda
data/ENSEXONS.rda
data/UC_UKBB.rda
data/ensgenes.rda
docs/404.html
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CD_FINNGEN.html
docs/reference/CD_UKBB.html
docs/reference/ENSEXONS.html
docs/reference/ENSGENES.html
docs/reference/Rplot001.png
docs/reference/UC_UKBB.html
docs/reference/annotate_with_nearest_gene.html
docs/reference/create_snpset.html
docs/reference/create_snpset_code.html
docs/reference/dat_column_check_and_set.html
docs/reference/effect_plot.html
docs/reference/figures/README-unnamed-chunk-10-1.png
docs/reference/figures/README-unnamed-chunk-11-1.png
docs/reference/figures/README-unnamed-chunk-12-1.png
docs/reference/figures/README-unnamed-chunk-13-1.png
docs/reference/figures/README-unnamed-chunk-14-1.png
docs/reference/figures/README-unnamed-chunk-15-1.png
docs/reference/figures/README-unnamed-chunk-16-1.png
docs/reference/figures/README-unnamed-chunk-18-1.png
docs/reference/figures/README-unnamed-chunk-19-1.png
docs/reference/figures/README-unnamed-chunk-20-1.png
docs/reference/figures/README-unnamed-chunk-5-1.png
docs/reference/figures/README-unnamed-chunk-6-1.png
docs/reference/figures/README-unnamed-chunk-7-1.png
docs/reference/figures/README-unnamed-chunk-8-1.png
docs/reference/figures/README-unnamed-chunk-9-1.png
docs/reference/flip_to_positive_allele_for_dat1.html
docs/reference/get_best_snp_per_MB.html
docs/reference/get_gene.html
docs/reference/get_genes_by_Gene_Symbol.html
docs/reference/get_overlapping_snps_by_pos.html
docs/reference/get_snps_within_region.html
docs/reference/get_top_hit.html
docs/reference/get_top_snp.html
docs/reference/get_topr_colors.html
docs/reference/index.html
docs/reference/locuszoom.html
docs/reference/manhattan.html
docs/reference/match_alleles.html
docs/reference/pipe.html
docs/reference/qqplot.html
docs/reference/qqtopr.html
docs/reference/regionplot.html
man/CD_FINNGEN.Rd
man/CD_UKBB.Rd
man/ENSEXONS.Rd
man/ENSGENES.Rd
man/UC_UKBB.Rd
man/annotate_with_nearest_gene.Rd
man/create_snpset.Rd
man/create_snpset_code.Rd
man/dat_column_check_and_set.Rd
man/effect_plot.Rd
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-11-1.png
man/figures/README-unnamed-chunk-12-1.png
man/figures/README-unnamed-chunk-13-1.png
man/figures/README-unnamed-chunk-14-1.png
man/figures/README-unnamed-chunk-15-1.png
man/figures/README-unnamed-chunk-16-1.png
man/figures/README-unnamed-chunk-18-1.png
man/figures/README-unnamed-chunk-19-1.png
man/figures/README-unnamed-chunk-20-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-9-1.png
man/flip_to_positive_allele_for_dat1.Rd
man/get_best_snp_per_MB.Rd
man/get_gene.Rd
man/get_genes_by_Gene_Symbol.Rd
man/get_overlapping_snps_by_pos.Rd
man/get_snps_within_region.Rd
man/get_top_snp.Rd
man/get_topr_colors.Rd
man/locuszoom.Rd
man/manhattan.Rd
man/match_alleles.Rd
man/pipe.Rd
man/qqtopr.Rd
man/regionplot.Rd
tests/testthat.R
tests/testthat/test-dummy.R
