get_snps_within_region: Get SNPs/variants within region
In wuxi-nextcode/topR: Create custom plots for viewing genetic association results using ggplot
Description
Usage
Arguments
Value
Examples
View source: R/setters_and_getters.R
Description
get_snps_within_region()
Usage
1
get_snps_within_region(df, region, chr = NULL, xmin = NULL, xmax = NULL)
Arguments
df
data frame of association results with the columns CHR and POS
region
string representing the genetic region (e.g chr16:50693587-50734041)
chr
chromosome (e.g. chr16)
xmin
include variants with POS larger than xmin
xmax
include variants with POS smaller than xmax
Value
the variants within the requested region
Examples
1
2
3
4
## Not run:
get_snps_within_region(dat, "chr16:50593587-50834041")
## End(Not run)
wuxi-nextcode/topR documentation built on Dec. 23, 2021, 6:13 p.m.
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Description Usage Arguments Value Examples
View source: R/setters_and_getters.R
Description
get_snps_within_region()
Usage
1 | get_snps_within_region(df, region, chr = NULL, xmin = NULL, xmax = NULL)
|
Arguments
df |
data frame of association results with the columns CHR and POS |
region |
string representing the genetic region (e.g chr16:50693587-50734041) |
chr |
chromosome (e.g. chr16) |
xmin |
include variants with POS larger than xmin |
xmax |
include variants with POS smaller than xmax |
Value
the variants within the requested region
Examples
1 2 3 4 | ## Not run:
get_snps_within_region(dat, "chr16:50593587-50834041")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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