annotate_with_nearest_gene: Get the nearest gene for one or more snps
In wuxi-nextcode/topR: Create custom plots for viewing genetic association results using ggplot
Description
Usage
Arguments
Value
Examples
View source: R/get_genes_and_annotation.R
Description
annotate_with_nearest_gene() Annotate the variant/snp with their nearest gene
Required parameters is a dataframe of SNPs (with the columns CHROM and POS)
Usage
1
annotate_with_nearest_gene(variants, protein_coding_only = F)
Arguments
variants
a dataframe of variant positions (CHROM and POS)
protein_coding_only
If set to TRUE only annotate with protein coding genes (the default value is FALSE)
Value
the input dataframe with Gene_Symbol as an additional column
Examples
1
2
3
4
## Not run:
annotate_with_nearest_gene(variants)
## End(Not run)
wuxi-nextcode/topR documentation built on Dec. 23, 2021, 6:13 p.m.
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Description Usage Arguments Value Examples
View source: R/get_genes_and_annotation.R
Description
annotate_with_nearest_gene() Annotate the variant/snp with their nearest gene
Required parameters is a dataframe of SNPs (with the columns CHROM and POS)
Usage
1 | annotate_with_nearest_gene(variants, protein_coding_only = F)
|
Arguments
variants |
a dataframe of variant positions (CHROM and POS) |
protein_coding_only |
If set to TRUE only annotate with protein coding genes (the default value is FALSE) |
Value
the input dataframe with Gene_Symbol as an additional column
Examples
1 2 3 4 | ## Not run:
annotate_with_nearest_gene(variants)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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