UC_UKBB: UKBB Ulcerative colitis (ICD 10 code K51)

In wuxi-nextcode/topR: Create custom plots for viewing genetic association results using ggplot

Description

Dataset retrieved from the UK biobank including of 5,452 UC cases (K51) and 481,862 controls. The dataset has been filtered on variants with P <1e-03.

Usage

UC_UKBB

Format

A data frame with 57,383 rows and 10 variables

CHROM

Chromosome, written as for example chr1 or 1

POS

genetic position of the variant

ID

Variant identifier, e.g. rsid

REF

Reference allele

ALT

Alternative allele

SE

Standard Error

P

P-value from Plink run, additive model, reggresion model GLM_FIRTH

OR

Odds Ratio

Max_Impact

Max variant impact (HIGH,MODERATE,LOW or LOWEST)

cohort_AF

variant allele frequency in the UKBB cohort)

Source

UC_K51_UKBB_p1e-03_5452_cases_481862_ctrls

wuxi-nextcode/topR documentation built on Dec. 23, 2021, 6:13 p.m.