plda_estimate_beta_given_gamma: Estimate beta matrix given data and gamma matrix

In wuxiaotiankevin/pLDA: The pLDA Package

Description

Calculate topic by gene (beta) matrix given data and gamma matrix.

Usage

plda_estimate_beta_given_gamma(x, theta.true)

Arguments

x	Input matrix. A matrix of positive integers where rows represents cells (documents) and column represents genes (words). Here the input matrix should be associated with gamma.
gamma	Topic by sample matrix gamma associated with input matrix x.

Value

log_beta matrix based on x and gamma.

Examples

## Not run: 
plda_estimate_beta(log_beta=plda_model$logProbW, x=new_expression_data)

## End(Not run)

wuxiaotiankevin/pLDA documentation built on Nov. 11, 2019, 11:01 p.m.