simulateCounts: Simulate expression count table
In wuxiaotiankevin/pLDA: The pLDA Package
Description
Usage
Arguments
Value
Examples
View source: R/simulation_counts.R
Description
Simulate expression count table given topic by gene, topic by cell matrices and library size.
Usage
1
simulateCounts(theta, beta, doc_length)
Arguments
theta
Theta matrix where rows represent cells and columns represent topics.
beta
Beta matrix where rows represent topics and columns represent genes.
doc_length
Library size of cell samples.
Value
A cell by gene matrix of expression counts.
Examples
1
2
3
4
## Not run:
counts <- simulateCounts(theta.true, beta.true, rep(100000, nrow(theta.true)))
## End(Not run)
wuxiaotiankevin/pLDA documentation built on Nov. 11, 2019, 11:01 p.m.
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Description Usage Arguments Value Examples
View source: R/simulation_counts.R
Description
Simulate expression count table given topic by gene, topic by cell matrices and library size.
Usage
1 | simulateCounts(theta, beta, doc_length)
|
Arguments
theta |
Theta matrix where rows represent cells and columns represent topics. |
beta |
Beta matrix where rows represent topics and columns represent genes. |
doc_length |
Library size of cell samples. |
Value
A cell by gene matrix of expression counts.
Examples
1 2 3 4 | ## Not run:
counts <- simulateCounts(theta.true, beta.true, rep(100000, nrow(theta.true)))
## End(Not run)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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