plot.rma: Plot Method for 'rma' Objects

In wviechtb/metafor: Meta-Analysis Package for R

Plot Method for 'rma' Objects

Description

Functions to plot objects of class "rma.uni", "rma.mh", "rma.peto", and "rma.glmm".

Usage

## S3 method for class 'rma.uni'
plot(x, qqplot=FALSE, ...)

## S3 method for class 'rma.mh'
plot(x, qqplot=FALSE, ...)

## S3 method for class 'rma.peto'
plot(x, qqplot=FALSE, ...)

## S3 method for class 'rma.glmm'
plot(x, qqplot=FALSE, ...) # not currently implemented

## S3 method for class 'rma.mv'
plot(x, qqplot=FALSE, ...) # not currently implemented

Arguments

x	an object of class "rma.uni", "rma.mh", or "rma.peto". The method is not (yet) implemented for objects of class "rma.glmm" or "rma.mv".
qqplot	logical to specify whether a normal QQ plot should be drawn (the default is FALSE).
...	other arguments.

Details

Four plots are produced. If the model does not contain any moderators, then a forest plot, funnel plot, radial plot, and a plot of the standardized residuals is provided. If qqplot=TRUE, the last plot is replaced by a normal QQ plot of the standardized residuals.

If the model contains moderators, then a forest plot, funnel plot, plot of the standardized residuals against the fitted values, and a plot of the standardized residuals is provided. If qqplot=TRUE, the last plot is replaced by a normal QQ plot of the standardized residuals.

Note

If the number of studies is large, the forest plot may become difficult to read due to the small font size. Stretching the plotting device vertically should provide more space.

Author(s)

Wolfgang Viechtbauer ([e-mail], https://www.metafor-project.org).

References

Viechtbauer, W. (2010). Conducting meta-analyses in R with the metafor package. Journal of Statistical Software, 36(3), 1–48. ⁠https://doi.org/10.18637/jss.v036.i03⁠

See Also

forest for forest plots, funnel for funnel plots, radial for radial plots, and qqnorm for normal QQ plots.

Examples

### calculate log risk ratios and corresponding sampling variances
dat <- escalc(measure="RR", ai=tpos, bi=tneg, ci=cpos, di=cneg, data=dat.bcg)

### fit random-effects model
res <- rma(yi, vi, data=dat)

### plot results
plot(res, qqplot=TRUE)

### fit mixed-effects model with absolute latitude and publication year as moderators
res <- rma(yi, vi, mods = ~ ablat + year, data=dat)

### plot results
plot(res, qqplot=TRUE)

wviechtb/metafor documentation built on Dec. 4, 2024, 1:03 a.m.