update.rma: Model Updating for 'rma' Objects

In wviechtb/metafor: Meta-Analysis Package for R

Model Updating for 'rma' Objects

Description

Function to update and (by default) refit "rma" models. It does this by extracting the call stored in the object, updating the call, and (by default) evaluating that call.

Usage

## S3 method for class 'rma'
update(object, formula., ..., evaluate=TRUE)

Arguments

object	an object of class "rma".
formula.	changes to the formula. See ‘Details’.
...	additional arguments to the call, or arguments with changed values.
evaluate	logical to specify whether to evaluate the new call or just return the call.

Details

For objects of class "rma.uni", "rma.glmm", and "rma.mv", the formula. argument can be used to update the set of moderators included in the model (see ‘Examples’).

Value

If evaluate=TRUE the fitted object, otherwise the updated call.

Author(s)

Based on update.default, with changes made by Wolfgang Viechtbauer ([e-mail], https://www.metafor-project.org) so that the formula updating works with the (somewhat non-standard) interface of the rma.uni, rma.glmm, and rma.mv functions.

References

Viechtbauer, W. (2010). Conducting meta-analyses in R with the metafor package. Journal of Statistical Software, 36(3), 1–48. ⁠https://doi.org/10.18637/jss.v036.i03⁠

See Also

rma.uni, rma.mh, rma.peto, rma.glmm, and rma.mv for functions to fit models which can be updated / refit.

Examples

### calculate log risk ratios and corresponding sampling variances
dat <- escalc(measure="RR", ai=tpos, bi=tneg, ci=cpos, di=cneg, data=dat.bcg)

### fit random-effects model (method="REML" is default)
res <- rma(yi, vi, data=dat, digits=3)
res

### fit mixed-effects model with two moderators (absolute latitude and publication year)
res <- update(res, ~ ablat + year)
res

### remove 'year' moderator
res <- update(res, ~ . - year)
res

### fit model with ML estimation
update(res, method="ML")

### example with rma.glmm()
res <- rma.glmm(measure="OR", ai=tpos, bi=tneg, ci=cpos, di=cneg, data=dat.bcg, digits=3)
res <- update(res, mods = ~ ablat)
res

### fit conditional model with approximate likelihood
update(res, model="CM.AL")

wviechtb/metafor documentation built on Dec. 4, 2024, 1:03 a.m.