ngsLCA_meganFile: Generate MEGAN Files

In wyc661217/ngsLCA: Process and Visualize Lca Files and Taxonomic Profiles

Generate MEGAN Files

Description

Generate files that can be inputted into MEGAN for taxa profiling. Results will be in "path/run/megan/".

Usage

ngsLCA_meganFile(path, run = "run01")

Arguments

path	working directory, same to ngsLCA_profile.
run	name of the run, default is "run01".

Value

MEGAN input taxa profiles.

Examples

ngsLCA_meganFile(path=system.file("extdata","lca_files",package="ngsLCA"),
                 run="run01")


## This will generate MEGAN format taxa profiles for
## the complete taxa profile as well as taxa groups
## and ranks (if available) of "run01". Resutls will
## be in "path/run01/megan/". These files can be
## directly used as input csv files in MEGAN for
## taxa profiling.

wyc661217/ngsLCA documentation built on June 2, 2025, 12:02 a.m.