ngsLCA_stratplot: Generate Taxa Abundance Stratplots

In wyc661217/ngsLCA: Process and Visualize Lca Files and Taxonomic Profiles

Generate Taxa Abundance Stratplots

Description

Generate stratplots for taxa profiles into "path/run/stratplot/" to show the reads abundance.

Usage

ngsLCA_stratplot(path, run = "run01", taxa.number = 10)

Arguments

path	working directory, same to ngsLCA_profile.
run	name of the run, default is "run01".
taxa.number	maximum number of taxa will be shown in stratplots; default is 10.

Value

Taxa abundance stratplots.

Examples

ngsLCA_stratplot(path=system.file("extdata","lca_files",package="ngsLCA"),
                 run="run01",
                 taxa.number=10)


## This will generate stratplots for the complete taxa profile
## as well as taxa groups and ranks (if available) of "run01",
## with showing the 10 most abundant taxa in each profile.
## Results will be in "path/run01/stratplot/".

wyc661217/ngsLCA documentation built on June 2, 2025, 12:02 a.m.