ngsLCA_rarefy: Rarefaction Taxa Reads Abundance
In wyc661217/ngsLCA: Process and Visualize Lca Files and Taxonomic Profiles

View source: R/ngsLCA_rarefy.R

ngsLCA_rarefy

R Documentation

Rarefaction Taxa Reads Abundance

Description

Generate rarefaction curves for taxa profiles in "path/run/rarefaction/". See vegan::rarefy for details.

Usage

ngsLCA_rarefy(path, run = "run01")

Arguments

`path`	working directory, same to `ngsLCA_profile`.
`run`	name of the run, default is "run01".

Value

Figures for rarefaction scales and rarefaction curves.

Examples

ngsLCA_rarefy(path=system.file("extdata","lca_files",package="ngsLCA"),
              run="run01")

## This will generate rarefaction curves for the
## complete taxa profile as well as taxa groups
## and ranks (if available) of "run01". Results
## will be in "path/run01/rarefaction/".

wyc661217/ngsLCA documentation built on June 2, 2025, 12:02 a.m.