GetGRangesFromEnsDb: GetGRangesFromEnsDb

In wzthu/ATACFlow: An Easy-to-use Systematic pipeline for ATACseq data analysis

GetGRangesFromEnsDb

Description

Extract genomic ranges from EnsDb object

Usage

GetGRangesFromEnsDb(
  ensdb,
  standard.chromosomes = TRUE,
  biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
  verbose = TRUE
)

Arguments

ensdb	An EnsDb object
standard.chromosomes	Keep only standard chromosomes
biotypes	Biotypes to keep
verbose	Display messages

Details

Pulls the transcript information for all chromosomes from an EnsDb object. This wraps crunch and applies the extractor function to all chromosomes present in the EnsDb object.

Value

GRanges

Examples

print("see https://satijalab.org/signac/reference/getgrangesfromensdb")

wzthu/ATACFlow documentation built on Aug. 9, 2022, 2:24 a.m.