GetTSSPositions: Find transcriptional start sites

View source: R/scUtilities.R

GetTSSPositionsR Documentation

Find transcriptional start sites

Description

Find transcriptional start sites

Usage

GetTSSPositions(ranges, biotypes = "protein_coding")

Arguments

ranges

A GRanges object containing gene annotations.

biotypes

Gene biotypes to include. If NULL, use all biotypes in the supplied gene annotation.

Details

Get the TSS positions from a set of genomic ranges containing gene positions. Ranges can contain exons, introns, UTRs, etc, rather than the whole transcript. Only protein coding gene biotypes are included in output.

Value

transcriptional start sites


wzthu/ATACFlow documentation built on Aug. 9, 2022, 2:24 a.m.