PerformLimmaDE: Perform differential expression analysis using Limma for...
In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data
View source: R/meta_data_utils.R
PerformLimmaDE R Documentation
Perform differential expression analysis using Limma for individually-uploaded data.
Description
This function performs DE analysis of individually-uploaded data prior to meta-analysis.
Usage
PerformLimmaDE(mSetObj = NA, dataName, p.lvl = 0.1, fc.lvl = 0)
Arguments
mSetObj
Input name of the created mSet Object
dataName
Input the name of the individual dataset for normalization.
p.lvl
Numeric, input the p-value (FDR) cutoff.
fc.lvl
Numeric, input the fold-change (FC) cutoff.
Author(s)
Jeff Xiajeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.
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View source: R/meta_data_utils.R
| PerformLimmaDE | R Documentation |
Perform differential expression analysis using Limma for individually-uploaded data.
Description
This function performs DE analysis of individually-uploaded data prior to meta-analysis.
Usage
PerformLimmaDE(mSetObj = NA, dataName, p.lvl = 0.1, fc.lvl = 0)
Arguments
mSetObj |
Input name of the created mSet Object |
dataName |
Input the name of the individual dataset for normalization. |
p.lvl |
Numeric, input the p-value (FDR) cutoff. |
fc.lvl |
Numeric, input the fold-change (FC) cutoff. |
Author(s)
Jeff Xiajeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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