PerformMS1ResultsFormatting: PerformMS1ResultsFormatting This function is used to format...

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

PerformMS1ResultsFormatting This function is used to format the results from other tools into the generic format of MetaboAnalystR Currently,we are supporting the compatibility for four commonly used open-source tools: MS-DIAL, MZmine, Asari and XCMS online The first parameter file_path should be a valid file of the result. User need to specify the type in the 2nd argument, type. This argument can be msdial, mzmine, asari and xcms Please note, if your original data does not contain meta information, you need to manually add them in the generated "metaboanalyst_input.csv" file The formatted file is 'sample in columns'.

Description

PerformMS1ResultsFormatting This function is used to format the results from other tools into the generic format of MetaboAnalystR Currently,we are supporting the compatibility for four commonly used open-source tools: MS-DIAL, MZmine, Asari and XCMS online The first parameter file_path should be a valid file of the result. User need to specify the type in the 2nd argument, type. This argument can be msdial, mzmine, asari and xcms Please note, if your original data does not contain meta information, you need to manually add them in the generated "metaboanalyst_input.csv" file The formatted file is 'sample in columns'.

Usage

PerformMS1ResultsFormatting(file_path, type, meta_data = NA)

Arguments

file_path
type
meta_data	this is path to a table containing two columns, the first column is the sample names and second column is the group information

xia-lab/MetaboAnalystR documentation built on Feb. 26, 2025, 7:40 p.m.