PerformMS2ResultsFormatting: PerformMS2ResultsFormatting This function is used to format...

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

PerformMS2ResultsFormatting This function is used to format the results from other tools into the generic format of MetaboAnalystR for functional analysis Currently,we are supporting the compatibility for four commonly used open-source tools: MS-FINDER, and SIRIUS The first parameter file_path should be a valid file of the result. User need to specify the type in the 2nd argument, type. This argument can be msfinder, or sirius The 3rd column

Description

PerformMS2ResultsFormatting This function is used to format the results from other tools into the generic format of MetaboAnalystR for functional analysis Currently,we are supporting the compatibility for four commonly used open-source tools: MS-FINDER, and SIRIUS The first parameter file_path should be a valid file of the result. User need to specify the type in the 2nd argument, type. This argument can be msfinder, or sirius The 3rd column

Usage

PerformMS2ResultsFormatting(file_path, type, MS1_features_list = NA)

Arguments

file_path	file path of NS2 file
type	type, can be msfinder or sirius
MS1_features_list	this is feature list used functional analysis

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.