PlotClustPCA: Plot K-means summary PCA plot

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

Plot K-means summary PCA plot

Description

Plot K-means summary PCA plot

Usage

PlotClustPCA(
  mSetObj,
  imgName,
  format = "png",
  dpi = 72,
  width = NA,
  colpal = "default",
  anal = "km",
  labels = "T"
)

Arguments

mSetObj	Input name of the created mSet Object
imgName	Input a name for the plot
format	Select the image format, "png", or "pdf".
dpi	Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
width	Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.
colpal	palete of color
anal	analysis type
labels	labels to show, default is "T"

Author(s)

Jeff [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.