PlotEnrichDotPlot: Plot MSEA Dot Plot

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

Plot MSEA Dot Plot

Description

Dot plot of enrichment analysis results.

Usage

PlotEnrichDotPlot(
  mSetObj = NA,
  enrichType = "ora",
  imgName,
  format = "png",
  dpi = 72,
  width = NA
)

Arguments

mSetObj	Input the name of the created mSetObj (see InitDataObjects)
enrichType	Input whether the enrichment analysis was over-respresentation analysis (ora) or quantitative enrichment analysis (qea).
imgName	Input a name for the plot
format	Select the image format, "png", or "pdf".
dpi	Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
width	Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on May 11, 2024, 2:18 a.m.