PlotOPLS.Splot: S-plot for OPLS-DA

View source: R/stats_chemometrics.R

PlotOPLS.SplotR Documentation

S-plot for OPLS-DA

Description

Orthogonal PLS-DA (from ropls) S-plot for important features from OPLS-DA

Usage

PlotOPLS.Splot(
  mSetObj = NA,
  imgName,
  plotType = "all",
  format = "png",
  dpi = 72,
  width = NA
)

Arguments

mSetObj

Input name of the created mSet Object

imgName

Input a name for the plot

plotType

plotType for the image, can be "all" or "custom"

format

Select the image format, "png", or "pdf".

dpi

Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.

width

Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.

Author(s)

Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)


xia-lab/MetaboAnalystR documentation built on April 15, 2024, 12:16 p.m.