PlotOPLS.Splot: S-plot for OPLS-DA

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

S-plot for OPLS-DA

Description

Orthogonal PLS-DA (from ropls) S-plot for important features from OPLS-DA

Usage

PlotOPLS.Splot(
  mSetObj = NA,
  imgName,
  plotType = "all",
  format = "png",
  dpi = 72,
  width = NA
)

Arguments

mSetObj	Input name of the created mSet Object
imgName	Input a name for the plot
plotType	plotType for the image, can be "all" or "custom"
format	Select the image format, "png", or "pdf".
dpi	Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
width	Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.