PlotPLS.Imp: Plot PLS important features

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

Plot PLS important features

Description

Plot PLS important features, BHan: added bgcolor parameter for B/W color

Usage

PlotPLS.Imp(
  mSetObj = NA,
  imgName,
  format = "png",
  dpi = 72,
  width = NA,
  type,
  feat.nm,
  feat.num,
  color.BW = FALSE
)

Arguments

mSetObj	Input name of the created mSet Object
imgName	Input a name for the plot
format	Select the image format, "png", or "pdf".
dpi	Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
width	Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.
type	Indicate the type variables of importance to use, "vip" to use VIp scores, or "type" for coefficients
feat.nm	Feature name
feat.num	Feature numbers
color.BW	Logical, true to use black and white, or false to not

Author(s)

Jeff [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.