PlotPathSummary: Plot a scatterplot (circle) overview of the matched pathways

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

Plot a scatterplot (circle) overview of the matched pathways

Description

x axis is the pathway impact factor y axis is the p value (from ORA or globaltest) return the circle information

Usage

PlotPathSummary(
  mSetObj = NA,
  show.grid,
  imgName,
  format = "png",
  dpi = 72,
  width = NA,
  xlim = NA,
  ylim = NA
)

Arguments

mSetObj	Input name of the created mSet Object
show.grid	logical, show grid or not
imgName	Input a name for the plot
format	Select the image format, "png", or "pdf".
dpi	Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
width	Input the width, there are 2 default widths, the first, width = NULL, is 10.5.
xlim	limit of x axis
ylim	limit of y axis

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on May 6, 2024, 2:41 a.m.