PlotPeaks2Paths: PlotPeaks2Paths

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

PlotPeaks2Paths

Description

Plots either the original mummichog or GSEA results.

Usage

PlotPeaks2Paths(
  mSetObj = NA,
  imgName = "",
  format = "png",
  dpi = 72,
  width = 9,
  labels = "default",
  num_annot = 5,
  interactive = F
)

Arguments

mSetObj	Input the name of the created mSetObj object
imgName	Input a name for the plot
format	Character, input the format of the image to create.
dpi	Numeric, input the dpi of the image to create.
width	Numeric, input the width of the image to create.
labels	Character, indicate if the plot should be labeled. By default it is set to "default", and the 5 top-ranked pathways per each algorithm will be plotted. Users can adjust the number of pathways to be annotated per pathway using the "num_annot" parameter.
num_annot	number of annotations for top plotting

Author(s)

Jasmine Chong, Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.