Read.PeakListData: Constructor to read uploaded user files into the mummichog...
In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data
View source: R/peaks_to_function.R
Read.PeakListData R Documentation
Constructor to read uploaded user files into the mummichog object
Description
This function handles reading in CSV or TXT files and filling in the mSet object
for mummichog analysis. It makes sure that all necessary columns are present.
Usage
Read.PeakListData(mSetObj=NA, filename = NA, meta.anal = FALSE, method = "pvalue")
Arguments
mSetObj
Input the name of the created mSetObj.
filename
Input the path name for the CSV/TXT files to read.
meta.anal
Logical, TRUE if data will be used for meta-analysis.
method
Input the type of statistical scores included in the
mummichog input. "pvalue" for p-values, "es" for effect-sizes, and
"both" for both p-values and effect-sizes.
Author(s)
Jasmine Chong, Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MetaboAnalystR documentation built on Feb. 17, 2025, 11:46 a.m.
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View source: R/peaks_to_function.R
| Read.PeakListData | R Documentation |
Constructor to read uploaded user files into the mummichog object
Description
This function handles reading in CSV or TXT files and filling in the mSet object for mummichog analysis. It makes sure that all necessary columns are present.
Usage
Read.PeakListData(mSetObj=NA, filename = NA, meta.anal = FALSE, method = "pvalue")
Arguments
mSetObj |
Input the name of the created mSetObj. |
filename |
Input the path name for the CSV/TXT files to read. |
meta.anal |
Logical, TRUE if data will be used for meta-analysis. |
method |
Input the type of statistical scores included in the mummichog input. "pvalue" for p-values, "es" for effect-sizes, and "both" for both p-values and effect-sizes. |
Author(s)
Jasmine Chong, Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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