SearchNetDB: Perform mapping of user's data to interaction network

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

Perform mapping of user's data to interaction network

Description

This function performs mapping of user's data to the internal network to create a network from the seed nodes

Usage

SearchNetDB(
  mSetObj = NA,
  db.type,
  table.nm,
  require.exp = TRUE,
  min.score = 900
)

Arguments

mSetObj	Input name of the created mSet Object
db.type	Input the database type
table.nm	Input the organism code for the sqlite table (ppi). For chemical type, the table.nm is drugbank of ctd
require.exp	Logical, only used for the STRING database
min.score	Input the minimal score, only used for the STRING database

Author(s)

Othman Soufan, Jeff Xia [e-mail], [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.