SetCurrentMsetLib: Set current user selected metset library for search

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

Set current user selected metset library for search

Description

if enrichment analysis, also prepare lib by creating a list of metabolite sets

Usage

SetCurrentMsetLib(mSetObj=NA, libname, excludeNum)

Arguments

mSetObj	Input the name of the created mSetObj (see InitDataObjects)
libname	Input user selected name of library, "self", "kegg_pathway", "smpdb_pathway", "blood", "urine", "csf", "snp", "predicted", "location", and "drug".
excludeNum	Users input the mimimum number compounds within selected metabolite sets (metabolitesets < excludeNum)

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.