UpdateEC_Rules: Update the mSetObj with user-selected parameters for MS Peaks...
In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data
View source: R/peaks_to_function.R
UpdateEC_Rules R Documentation
Update the mSetObj with user-selected parameters for MS Peaks to Pathways.
Description
This functions handles updating the mSet object for mummichog analysis.
Usage
UpdateEC_Rules(mSetObj = NA, force_primary_ion, rt_tol)
Arguments
mSetObj
Input the name of the created mSetObj (see InitDataObjects).
force_primary_ion
Character, if "yes", only mz features that match compounds with a primary ion are kept.
rt_tol
Numeric. Input the retention time tolerance used for determining ECs (in seconds).
Author(s)
Jasmine Chong, Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.
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View source: R/peaks_to_function.R
| UpdateEC_Rules | R Documentation |
Update the mSetObj with user-selected parameters for MS Peaks to Pathways.
Description
This functions handles updating the mSet object for mummichog analysis.
Usage
UpdateEC_Rules(mSetObj = NA, force_primary_ion, rt_tol)
Arguments
mSetObj |
Input the name of the created mSetObj (see InitDataObjects). |
force_primary_ion |
Character, if "yes", only mz features that match compounds with a primary ion are kept. |
rt_tol |
Numeric. Input the retention time tolerance used for determining ECs (in seconds). |
Author(s)
Jasmine Chong, Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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